Heng Li
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6ad5a3c086
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removed color-space support
which has been broken since 0.6.x
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2013-02-12 10:21:17 -05:00 |
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Heng Li
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1cef219667
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compute CIGAR; rev seq not working
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2012-04-07 22:00:03 -04:00 |
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Heng Li
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66154ff5d2
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towards refined gapped; unfinished
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2012-04-07 01:25:39 -04:00 |
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Heng Li
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bdc953cad9
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Tim's suggestion suffix file name with .64
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2012-03-29 12:22:51 -04:00 |
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Heng Li
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a471f1918b
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bugfix: long-existing out-of-boundary bug
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2012-03-19 13:45:09 -04:00 |
Heng Li
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dc4008936c
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avoid duplicated XA tags
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2011-11-19 14:52:47 -05:00 |
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Heng Li
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7664795ffb
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fixed a minor issue about +/-1
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2011-10-25 13:00:41 -04:00 |
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Heng Li
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aabb807734
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concatenate for-rev sequences in the end
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2011-10-25 11:22:08 -04:00 |
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Heng Li
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7b4266a6e5
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bugfix: integer overflow and strand error in sampe
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2011-10-24 17:07:12 -04:00 |
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Heng Li
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1cb409aaf2
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use forward-only pac to reduce memory
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2011-10-21 12:03:14 -04:00 |
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Heng Li
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ec307a10e6
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PE seems working; more testing needed
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2011-10-20 17:45:41 -04:00 |
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Heng Li
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243e735431
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applied patches from Alec Wysoker
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2011-05-04 09:46:50 -04:00 |
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Heng Li
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51d354cd28
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Added barcode support
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2011-01-15 15:35:39 -05:00 |
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Heng Li
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10721ca602
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Added an option to accept Illumina 1.3+ fastq
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2011-01-15 14:07:08 -05:00 |
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Heng Li
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f335b33624
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fixed a bug in bwase: no RG for unmapped read pairs
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2011-01-15 10:32:45 -05:00 |
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Heng Li
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5e30884730
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Update to the latest modfication 0.5.9rc1-2. Update ChangeLog
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2011-01-13 20:54:10 -05:00 |
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Heng Li
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007c3eb75d
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Imported from my local bwa repository, the master repository.
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2011-01-13 20:52:12 -05:00 |