6ad5a3c086
removed color-space support
...
which has been broken since 0.6.x
2013-02-12 10:21:17 -05:00
e5ab59db53
Multiple changes:
...
1. Removed bwa.{h,c}. I am not going to finish them anyway.
2. Updated to the latest khash.h, which should be faster.
3. Define 64-bit vector and 128-bit integer/vector in utils.h.
2013-02-12 09:50:28 -05:00
59eaf650ac
code backup
2013-02-11 10:59:38 -05:00
5a0b32bfd2
updated to the latest kseq.h
2013-02-06 14:38:40 -05:00
91debf412b
move smem iterators to bwamem.{c,h}
2013-01-31 13:59:48 -05:00
1cef219667
compute CIGAR; rev seq not working
2012-04-07 22:00:03 -04:00
a1abfe9977
API: aln seems working
2012-04-07 00:23:01 -04:00
182cb2e89c
use standard SW when no SSE2
2011-11-19 19:38:21 -05:00
c8c79ef024
mate rescue seems working (not MT)
2011-11-06 16:20:40 -05:00
17eaac5a21
compute insert size distribution
2011-11-05 23:17:52 -04:00
f56edd07dd
forward-backward search seems working
2011-10-25 12:31:36 -04:00
22c2252e15
added bidirectional bwt; seems buggy
2011-10-25 00:22:28 -04:00
b96f180a15
move bwt_gen/* to the root directory
2011-10-20 11:56:24 -04:00
007c3eb75d
Imported from my local bwa repository, the master repository.
2011-01-13 20:52:12 -05:00
Heng Li
Heng Li