Commit Graph

318 Commits (4e705c037eb17faf0d46980642371be0dc6dfb57)

Author SHA1 Message Date
Heng Li 7b4266a6e5 bugfix: integer overflow and strand error in sampe 2011-10-24 17:07:12 -04:00
Heng Li b59fd2bf47 fixed an integer overflow 2011-10-24 14:39:57 -04:00
Heng Li 8f3c780552 fixed a potential int overflow 2011-10-24 14:22:39 -04:00
Heng Li 1f970b4557 updated revision number 2011-10-24 14:14:42 -04:00
Heng Li 26b77eabef updated version number 2011-10-21 12:32:00 -04:00
Heng Li 46123639cf removed reverse pac; bwa is not working right now 2011-10-20 12:09:35 -04:00
Heng Li d70754e234 update revision number 2011-10-14 10:32:31 -04:00
Heng Li 72563c38f3 automatically choose the algorithm for BWT 2011-06-09 17:33:25 -04:00
Heng Li a74523a68d increase maximum barcode length limit to 63bp 2011-06-09 17:17:13 -04:00
Heng Li 243e735431 applied patches from Alec Wysoker 2011-05-04 09:46:50 -04:00
Heng Li 87664941b0 Release bwa-0.5.9 (r16) 2011-01-24 22:00:24 -05:00
Heng Li 7fd8948689 Added recommendation for PacBio reads 2011-01-22 13:20:11 -05:00
Heng Li 1d7d8be9e8 Put BC: to both ends 2011-01-18 20:16:57 -05:00
Heng Li 51d354cd28 Added barcode support 2011-01-15 15:35:39 -05:00
Heng Li 10721ca602 Added an option to accept Illumina 1.3+ fastq 2011-01-15 14:07:08 -05:00
Heng Li f335b33624 fixed a bug in bwase: no RG for unmapped read pairs 2011-01-15 10:32:45 -05:00
Heng Li 5e30884730 Update to the latest modfication 0.5.9rc1-2. Update ChangeLog 2011-01-13 20:54:10 -05:00
Heng Li 007c3eb75d Imported from my local bwa repository, the master repository. 2011-01-13 20:52:12 -05:00