Heng Li
|
60b728487a
|
r941: set a min length for 3rd-round seeding
|
2014-10-21 13:15:42 -04:00 |
|
Heng Li
|
038af2a551
|
r929: added simplified LAST-like seeding
|
2014-10-20 17:00:31 -04:00 |
|
Heng Li
|
b5cba257c1
|
r809: new strategy for the -a mode
|
2014-08-25 11:59:27 -04:00 |
|
Heng Li
|
1bba5ef20e
|
r807: allow to change block size in bwt_gen
For a very large reference genome, the default is too small.
|
2014-08-25 10:31:54 -04:00 |
|
Heng Li
|
8ede4ffbfa
|
Fixed clang compiling warnings
|
2014-03-16 15:18:22 -04:00 |
|
Heng Li
|
5370bb23a3
|
Updated NEWS; added stddef.h for size_t
I thought size_t is defined in stdlib.h, but it is not always.
|
2013-03-08 14:14:42 -05:00 |
|
Heng Li
|
80e1137a6c
|
move bwt_invPsi() from bwt.h to bwt.c
|
2013-02-26 11:57:36 -05:00 |
|
Heng Li
|
174fe0f1d5
|
code backup: less dependent on gcc optimization
|
2013-02-26 11:14:19 -05:00 |
|
Heng Li
|
a19ab654df
|
no effective change
|
2013-02-23 14:21:19 -05:00 |
|
Heng Li
|
dd85c528d6
|
an alternative bwt_invPsi() implementation
Cleaner, but not necessarily faster.
|
2013-02-23 13:59:18 -05:00 |
|
Heng Li
|
91debf412b
|
move smem iterators to bwamem.{c,h}
|
2013-01-31 13:59:48 -05:00 |
|
Heng Li
|
5a4a0c4173
|
a bit refactoring for further changes
|
2013-01-31 12:34:05 -05:00 |
|
Heng Li
|
6641788d38
|
preparation for further changes
|
2013-01-31 11:42:31 -05:00 |
Heng Li
|
150bfbdef4
|
fixed a deadlock; SMEM iterator
|
2011-11-24 19:15:14 -05:00 |
|
Heng Li
|
f56edd07dd
|
forward-backward search seems working
|
2011-10-25 12:31:36 -04:00 |
|
Heng Li
|
22c2252e15
|
added bidirectional bwt; seems buggy
|
2011-10-25 00:22:28 -04:00 |
|
Heng Li
|
c948c647a0
|
make changes to bwt.c
|
2011-10-19 17:42:42 -04:00 |
|
Heng Li
|
007c3eb75d
|
Imported from my local bwa repository, the master repository.
|
2011-01-13 20:52:12 -05:00 |