Heng Li
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042e1f4442
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r334: added pemerge to bwa
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2013-03-06 21:55:02 -05:00 |
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Heng Li
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d35f33b513
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r316: don't allocate zero-length memory
It is not a bug, but Electric Fence does not like that.
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2013-03-04 10:22:18 -05:00 |
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Heng Li
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61dd3bf13a
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r283: prepare for fixing cross-ref aln
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2013-02-25 22:49:15 -05:00 |
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Heng Li
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5f8c6efbc3
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forbid x-bounary bns_get_seq(); code backup
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2013-02-16 09:48:44 -05:00 |
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Heng Li
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5a0b32bfd2
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updated to the latest kseq.h
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2013-02-06 14:38:40 -05:00 |
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Heng Li
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00e5302219
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routine to get subsequence from 2-bit pac
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2013-02-01 16:39:50 -05:00 |
Heng Li
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8f89f55484
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fixed a segfault when there are too few good bases.
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2011-11-17 22:13:38 -05:00 |
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Heng Li
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aabb807734
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concatenate for-rev sequences in the end
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2011-10-25 11:22:08 -04:00 |
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Heng Li
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ca809a44d9
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build .pac in memory; prepare for further changes
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2011-10-25 10:27:13 -04:00 |
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Heng Li
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7626595e3a
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backup the current debugging code; more changes
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2011-10-25 10:03:57 -04:00 |
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Heng Li
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1cb409aaf2
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use forward-only pac to reduce memory
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2011-10-21 12:03:14 -04:00 |
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Heng Li
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fe9da3c704
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allow to pac forward strand only
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2011-10-21 10:57:12 -04:00 |
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Heng Li
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ec307a10e6
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PE seems working; more testing needed
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2011-10-20 17:45:41 -04:00 |
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Heng Li
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2d2db5d50f
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aln seems working
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2011-10-20 16:13:35 -04:00 |
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Heng Li
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46123639cf
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removed reverse pac; bwa is not working right now
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2011-10-20 12:09:35 -04:00 |
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Heng Li
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70da24e177
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restructure bns_fasta2bntseq() for further changes
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2011-10-20 11:53:44 -04:00 |
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Heng Li
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72563c38f3
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automatically choose the algorithm for BWT
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2011-06-09 17:33:25 -04:00 |
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Heng Li
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007c3eb75d
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Imported from my local bwa repository, the master repository.
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2011-01-13 20:52:12 -05:00 |