4 Commits (17fb85a2275e2c9e2c3e69c68cc42b90eaeff58a)

Author	SHA1	Message	Date
Heng Li	599e840779	r397: multi changes/bugfixes to bwa-backtrack ... 1. Check .sai versioning 2. Keep track of #ins and #del during backtrack 3. Use info above to get accurate aligned regions; don't call SW extension any more 4. Identify alignment crossing the for-rev boundary 5. Fixed a bug in printing the XA tag: ungapped alignments missing	2013-05-24 16:28:18 -04:00
Heng Li	a1abfe9977	API: aln seems working	2012-04-07 00:23:01 -04:00
Heng Li	2d2db5d50f	aln seems working	2011-10-20 16:13:35 -04:00
Heng Li	007c3eb75d	Imported from my local bwa repository, the master repository.	2011-01-13 20:52:12 -05:00