zzh
20e072f6af
所有代码都合并了，还差一点建立索引的时候，一起都建立了
2024-04-02 07:42:37 +08:00
0aa7e0a402
Ensure exit status of 1 if given invalid options or index files are not found.
...
Added missing default cases in option scanning.
Ensure exit value is 1 if bwa_idx_load or bwa_idx_infer_prefix fail.
These changes extend the previous one, which only fixed the mem aligner.
2013-04-29 13:58:28 +01:00
cfa7165036
cleanup index loading code
2013-02-23 16:10:48 -05:00
292f9061ab
r132: optionally copy FASTA/Q comment to SAM
2012-10-26 12:54:32 -04:00
f44edd4fc9
r128: more conservative chaining filter
2012-06-28 14:51:02 -04:00
cd818687ac
r115: added -I and -S to bwasw
2012-04-17 20:43:43 -04:00
173b93dfd4
debugging code: bwasw has a rare bug
2012-04-02 09:37:02 -04:00
bdc953cad9
Tim's suggestion suffix file name with .64
2012-03-29 12:22:51 -04:00
9f84384ed2
reordering BWA-SW command-line prompt
2011-11-23 23:36:08 -05:00
b17b6577ac
removed a useless bwa-sw CMD option
2011-11-23 23:30:14 -05:00
06687a33b9
bwasw: read and align two fastq at a time
2011-11-05 14:00:01 -04:00
4c43c5914d
this is better; but still buggy
2011-10-24 11:50:11 -04:00
29c3acfb31
not segfault immediately; but buggy
2011-10-24 09:36:52 -04:00
7fd8948689
Added recommendation for PacBio reads
2011-01-22 13:20:11 -05:00
dac5395126
fixed a typo in help
2011-01-21 23:56:18 -05:00
5e30884730
Update to the latest modfication 0.5.9rc1-2. Update ChangeLog
2011-01-13 20:54:10 -05:00
007c3eb75d
Imported from my local bwa repository, the master repository.
2011-01-13 20:52:12 -05:00
zzh
Rob Davies
Heng Li
Heng Li