Heng Li
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292f9061ab
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r132: optionally copy FASTA/Q comment to SAM
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2012-10-26 12:54:32 -04:00 |
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Heng Li
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f44edd4fc9
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r128: more conservative chaining filter
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2012-06-28 14:51:02 -04:00 |
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Heng Li
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cd818687ac
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r115: added -I and -S to bwasw
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2012-04-17 20:43:43 -04:00 |
Heng Li
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b5170e0efa
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output the NM tag
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2011-11-24 11:51:38 -05:00 |
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Heng Li
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9f84384ed2
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reordering BWA-SW command-line prompt
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2011-11-23 23:36:08 -05:00 |
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Heng Li
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b17b6577ac
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removed a useless bwa-sw CMD option
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2011-11-23 23:30:14 -05:00 |
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Heng Li
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fa8cfe5567
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bugfix: wrong mapping quality
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2011-11-12 12:12:45 -05:00 |
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Heng Li
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b42910ada6
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proper mate information
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2011-11-12 00:49:21 -05:00 |
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Heng Li
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e06685db45
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bwa-sw PE seems working (SAM is incorrect)
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2011-11-07 00:51:43 -05:00 |
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Heng Li
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c8c79ef024
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mate rescue seems working (not MT)
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2011-11-06 16:20:40 -05:00 |
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Heng Li
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17eaac5a21
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compute insert size distribution
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2011-11-05 23:17:52 -04:00 |
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Heng Li
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06687a33b9
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bwasw: read and align two fastq at a time
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2011-11-05 14:00:01 -04:00 |
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Heng Li
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29c3acfb31
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not segfault immediately; but buggy
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2011-10-24 09:36:52 -04:00 |
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Heng Li
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b3397a1f14
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changes to bwa-sw for the 64-bit support; unfinish
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2011-10-21 13:32:45 -04:00 |
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Heng Li
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007c3eb75d
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Imported from my local bwa repository, the master repository.
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2011-01-13 20:52:12 -05:00 |