Heng Li
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5d15c8b09f
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Merge pull request #129 from lexentbio/bwakit_fix_sort
Fix output file parameter for samtools sort
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2017-07-30 19:14:09 -04:00 |
Ram Yalamanchili
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7a77cc4785
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Fix output file parameter for samtools sort
samtools sort v0.7.15+ requires -o flag to specify the output file
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2017-05-18 15:42:25 -07:00 |
Jacob Pfeil
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9dfb9708db
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Add -M option to bwakit
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2016-11-09 11:36:55 -08:00 |
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Heng Li
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2c078eb667
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option to skip ALT
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2016-03-16 16:06:49 -04:00 |
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Heng Li
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d7ce7e1395
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hs38D1=>hs38DH; cmd help for run-gen-ref
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2014-12-23 11:48:59 -05:00 |
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Heng Li
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c05a721f28
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improved doc and don't type HLA by default
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2014-12-21 00:12:11 -05:00 |
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Heng Li
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d58beeee56
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smarter about path finding
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2014-11-19 12:38:55 -05:00 |
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Heng Li
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9ade171f7a
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transfer read groups from the input BAM
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2014-11-19 11:43:59 -05:00 |
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Heng Li
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15c93e7a52
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renamed extras to bwakit for clarity
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2014-11-19 10:37:03 -05:00 |