Imran Haque
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27dd1da702
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Exclude empty SAM lines in bounds check for ALT postprocessor
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2018-04-07 07:47:32 +00:00 |
Heng Li
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5d15c8b09f
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Merge pull request #129 from lexentbio/bwakit_fix_sort
Fix output file parameter for samtools sort
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2017-07-30 19:14:09 -04:00 |
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Heng Li
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31bf49d814
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Merge pull request #96 from jpfeil/master
Add -M option to run-bwamem
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2017-07-30 16:57:30 -04:00 |
Ram Yalamanchili
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7a77cc4785
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Fix output file parameter for samtools sort
samtools sort v0.7.15+ requires -o flag to specify the output file
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2017-05-18 15:42:25 -07:00 |
Brad Langhorst
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6442d009cd
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updates grch38 URL
simple URL update for grch38
fixes #111, #115
grch37 link is still valid
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2017-04-27 08:40:48 -04:00 |
Jacob Pfeil
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9dfb9708db
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Add -M option to bwakit
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2016-11-09 11:36:55 -08:00 |
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Heng Li
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2c078eb667
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option to skip ALT
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2016-03-16 16:06:49 -04:00 |
Melissa Gymrek
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9be943cec0
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Editing URL for b38 download
The previous link appears to no longer exist.
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2016-01-17 10:58:02 -05:00 |
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Heng Li
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6c668d3e1a
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fixed a bug in reverse-complement
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2015-08-27 10:44:08 -04:00 |
|
Heng Li
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1f99921b73
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changed download link: 0.7.11 => 0.7.12
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2014-12-29 16:43:22 -05:00 |
|
Heng Li
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d7ce7e1395
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hs38D1=>hs38DH; cmd help for run-gen-ref
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2014-12-23 11:48:59 -05:00 |
|
Heng Li
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c05a721f28
|
improved doc and don't type HLA by default
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2014-12-21 00:12:11 -05:00 |
|
Heng Li
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5aba188969
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write empty .gt file as a placeholder
to suppress error messages from run-bwamem
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2014-12-20 22:27:27 -05:00 |
|
Heng Li
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32c4e3fe5a
|
updated decoy sequences and names
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2014-12-20 22:24:13 -05:00 |
|
Heng Li
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d6e8e5929b
|
Updated READMEs a little
|
2014-12-01 09:50:47 -05:00 |
|
Heng Li
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6609bafa17
|
moved directory structure to this README
There are too many README files...
|
2014-11-19 12:45:21 -05:00 |
|
Heng Li
|
d58beeee56
|
smarter about path finding
|
2014-11-19 12:38:55 -05:00 |
|
Heng Li
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d36083bdc5
|
minor changes
|
2014-11-19 12:33:06 -05:00 |
|
Heng Li
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84024101fa
|
minor fix to a link
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2014-11-19 12:31:32 -05:00 |
|
Heng Li
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1993cb634d
|
Split README-alt.md into two documentations
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2014-11-19 12:29:35 -05:00 |
|
Heng Li
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9ade171f7a
|
transfer read groups from the input BAM
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2014-11-19 11:43:59 -05:00 |
|
Heng Li
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15c93e7a52
|
renamed extras to bwakit for clarity
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2014-11-19 10:37:03 -05:00 |