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Merge pull request #190 from ihaque-freenome/bwa-postalt-fix 

Bug/patch: bwa-postalt.js writes invalid output for SAM input that is an exact multiple of 65536 bytes in length
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Heng Li 2018-04-07 18:03:10 -04:00 committed by GitHub
parent fde1fd7ce3 27dd1da702
commit f9294c0593
1 changed files with 1 additions and 1 deletions
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bwakit/bwa-postalt.js
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@ -283,7 +283,7 @@ function bwa_postalt(args)
// process SAM
var buf2 = [], hla = {};
file = args.length - getopt.ind >= 2? new File(args[getopt.ind+1]) : new File();
while (file.readline(buf) >= 0) {
while (file.readline(buf) > 0) {
var m, line = buf.toString();
if (line.charAt(0) == '@') { // print and then skip the header line