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Output mapping quality with XB

This commit is contained in:
Nils Homer 2020-08-06 10:10:58 -07:00 committed by GitHub
parent 94ff6b297a
commit f717ea1318
1 changed files with 2 additions and 0 deletions
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2
bwamem_extra.c
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@ -155,6 +155,8 @@ char **mem_gen_alt(const mem_opt_t *opt, const bntseq_t *bns, const uint8_t *pac
if (opt->flag & MEM_F_XB) { if (opt->flag & MEM_F_XB) {
kputc(',', &str); kputc(',', &str);
kputw(t.score, &str); kputw(t.score, &str);
kputc(',', &str);
kputw(t.mapq, &str);
} }
kputc(';', &str); kputc(';', &str);
free(t.cigar); free(t.cigar);