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Heng Li 2019-07-09 15:44:34 -04:00
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[![Build Status](https://travis-ci.org/lh3/bwa.svg?branch=dev)](https://travis-ci.org/lh3/bwa)
[![SourceForge Downloads](https://img.shields.io/sourceforge/dt/bio-bwa.svg)](https://sourceforge.net/projects/bio-bwa/files/?source=navbar)
[![GitHub Downloads](https://img.shields.io/github/downloads/lh3/bwa/total.svg?style=flat)](https://github.com/lh3/bwa/releases)
[![SourceForge Downloads](https://img.shields.io/sourceforge/dt/bio-bwa.svg?label=SF%20downloads)](https://sourceforge.net/projects/bio-bwa/files/?source=navbar)
[![GitHub Downloads](https://img.shields.io/github/downloads/lh3/bwa/total.svg?style=flat&label=GitHub%20downloads)](https://github.com/lh3/bwa/releases)
[![BioConda Install](https://img.shields.io/conda/dn/bioconda/bwa.svg?style=flag&label=BioConda%20install)](https://anaconda.org/bioconda/bwa)
**Note: [minimap2][minimap2] has replaced BWA-MEM for __PacBio and Nanopore__ read
alignment.** It retains all major BWA-MEM features, but is ~50 times as fast,