From 1a11a6f4b9b07981d38d384b6a4bff888dd89591 Mon Sep 17 00:00:00 2001 From: Nils Homer Date: Thu, 6 Aug 2020 10:08:29 -0700 Subject: [PATCH 1/2] Document "-u" --- fastmap.c | 1 + 1 file changed, 1 insertion(+) diff --git a/fastmap.c b/fastmap.c index c865426..226f5a1 100644 --- a/fastmap.c +++ b/fastmap.c @@ -312,6 +312,7 @@ int main_mem(int argc, char *argv[]) fprintf(stderr, " specify the mean, standard deviation (10%% of the mean if absent), max\n"); fprintf(stderr, " (4 sigma from the mean if absent) and min of the insert size distribution.\n"); fprintf(stderr, " FR orientation only. [inferred]\n"); + fprintf(stderr, " -u output XB instead of XA; XB is XA with the alignment score added\n"); fprintf(stderr, "\n"); fprintf(stderr, "Note: Please read the man page for detailed description of the command line and options.\n"); fprintf(stderr, "\n"); From 9cbbd6bf9412faae0fde92f01e9632d2ae11b517 Mon Sep 17 00:00:00 2001 From: Nils Homer Date: Wed, 12 Aug 2020 08:51:19 -0700 Subject: [PATCH 2/2] Update fastmap.c --- fastmap.c | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/fastmap.c b/fastmap.c index 226f5a1..db45208 100644 --- a/fastmap.c +++ b/fastmap.c @@ -312,7 +312,7 @@ int main_mem(int argc, char *argv[]) fprintf(stderr, " specify the mean, standard deviation (10%% of the mean if absent), max\n"); fprintf(stderr, " (4 sigma from the mean if absent) and min of the insert size distribution.\n"); fprintf(stderr, " FR orientation only. [inferred]\n"); - fprintf(stderr, " -u output XB instead of XA; XB is XA with the alignment score added\n"); + fprintf(stderr, " -u output XB instead of XA; XB is XA with the alignment score added.\n"); fprintf(stderr, "\n"); fprintf(stderr, "Note: Please read the man page for detailed description of the command line and options.\n"); fprintf(stderr, "\n");