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Fix a few typos in man page

This commit is contained in:
Jason Gilliland 2016-03-31 12:26:42 -04:00
parent bb7533e32c
commit e10fc577e1
1 changed files with 2 additions and 2 deletions
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@ -302,7 +302,7 @@ Output all found alignments for single-end or unpaired paired-end reads. These
alignments will be flagged as secondary alignments. alignments will be flagged as secondary alignments.
.TP .TP
.B -C .B -C
Append append FASTA/Q comment to SAM output. This option can be used to Append FASTA/Q comment to SAM output. This option can be used to
transfer read meta information (e.g. barcode) to the SAM output. Note that the transfer read meta information (e.g. barcode) to the SAM output. Note that the
FASTA/Q comment (the string after a space in the header line) must conform the SAM FASTA/Q comment (the string after a space in the header line) must conform the SAM
spec (e.g. BC:Z:CGTAC). Malformated comments lead to incorrect SAM output. spec (e.g. BC:Z:CGTAC). Malformated comments lead to incorrect SAM output.
@ -316,7 +316,7 @@ supplementary alignments.
Mark shorter split hits as secondary (for Picard compatibility). Mark shorter split hits as secondary (for Picard compatibility).
.TP .TP
.BI -v \ INT .BI -v \ INT
Control the verbose level of the output. This option has not been fully Control the verbosity level of the output. This option has not been fully
supported throughout BWA. Ideally, a value 0 for disabling all the output to supported throughout BWA. Ideally, a value 0 for disabling all the output to
stderr; 1 for outputting errors only; 2 for warnings and errors; 3 for stderr; 1 for outputting errors only; 2 for warnings and errors; 3 for
all normal messages; 4 or higher for debugging. When this option takes value all normal messages; 4 or higher for debugging. When this option takes value