From deb19593aac9c8210fef426e1d2371d71eacec1e Mon Sep 17 00:00:00 2001 From: Heng Li Date: Sat, 2 Nov 2013 12:25:53 -0400 Subject: [PATCH] r418: use the new mapQ estimator by default --- bwamem.c | 4 ++-- main.c | 2 +- 2 files changed, 3 insertions(+), 3 deletions(-) diff --git a/bwamem.c b/bwamem.c index 61fa0dd..c1f190f 100644 --- a/bwamem.c +++ b/bwamem.c @@ -64,8 +64,8 @@ mem_opt_t *mem_opt_init() o->n_threads = 1; o->max_matesw = 100; o->mask_level_redun = 0.95; -// o->mapQ_coef_len = 100; o->mapQ_coef_fac = log(o->mapQ_coef_len); - o->mapQ_coef_len = o->mapQ_coef_fac = 0; + o->mapQ_coef_len = 50; o->mapQ_coef_fac = log(o->mapQ_coef_len); +// o->mapQ_coef_len = o->mapQ_coef_fac = 0; bwa_fill_scmat(o->a, o->b, o->mat); return o; } diff --git a/main.c b/main.c index a215408..8f76706 100644 --- a/main.c +++ b/main.c @@ -3,7 +3,7 @@ #include "utils.h" #ifndef PACKAGE_VERSION -#define PACKAGE_VERSION "0.7.5a-r416" +#define PACKAGE_VERSION "0.7.5a-r418" #endif int bwa_fa2pac(int argc, char *argv[]);