From ddbd5f7fb777d3268b0261473e33dda4e3f50fcf Mon Sep 17 00:00:00 2001 From: Heng Li Date: Tue, 9 Mar 2021 08:56:52 -0500 Subject: [PATCH] Removed the debug output; resolves #320 --- bwamem.c | 4 ---- 1 file changed, 4 deletions(-) diff --git a/bwamem.c b/bwamem.c index 859aff4..966e8d0 100644 --- a/bwamem.c +++ b/bwamem.c @@ -1205,13 +1205,11 @@ static void worker1(void *data, int i, int tid) if (!(w->opt->flag&MEM_F_PE)) { if (bwa_verbose >= 4) printf("=====> Processing read '%s' <=====\n", w->seqs[i].name); w->regs[i] = mem_align1_core(w->opt, w->bwt, w->bns, w->pac, w->seqs[i].l_seq, w->seqs[i].seq, w->aux[tid]); - fprintf(stderr, "Q1\t%s\t%.3f\t%d\n", w->seqs[i].name, peakrss() / 1073741824.0, tid); } else { if (bwa_verbose >= 4) printf("=====> Processing read '%s'/1 <=====\n", w->seqs[i<<1|0].name); w->regs[i<<1|0] = mem_align1_core(w->opt, w->bwt, w->bns, w->pac, w->seqs[i<<1|0].l_seq, w->seqs[i<<1|0].seq, w->aux[tid]); if (bwa_verbose >= 4) printf("=====> Processing read '%s'/2 <=====\n", w->seqs[i<<1|1].name); w->regs[i<<1|1] = mem_align1_core(w->opt, w->bwt, w->bns, w->pac, w->seqs[i<<1|1].l_seq, w->seqs[i<<1|1].seq, w->aux[tid]); - fprintf(stderr, "Q1\t%s\t%.3f\t%d\n", w->seqs[i<<1|0].name, peakrss() / 1073741824.0, tid); } } @@ -1225,12 +1223,10 @@ static void worker2(void *data, int i, int tid) mem_mark_primary_se(w->opt, w->regs[i].n, w->regs[i].a, w->n_processed + i); if (w->opt->flag & MEM_F_PRIMARY5) mem_reorder_primary5(w->opt->T, &w->regs[i]); mem_reg2sam(w->opt, w->bns, w->pac, &w->seqs[i], &w->regs[i], 0, 0); - fprintf(stderr, "Q2\t%s\t%.3f\n", w->seqs[i].name, peakrss() / 1073741824.0); free(w->regs[i].a); } else { if (bwa_verbose >= 4) printf("=====> Finalizing read pair '%s' <=====\n", w->seqs[i<<1|0].name); mem_sam_pe(w->opt, w->bns, w->pac, w->pes, (w->n_processed>>1) + i, &w->seqs[i<<1], &w->regs[i<<1]); - fprintf(stderr, "Q2\t%s\t%.3f\n", w->seqs[i<<1|0].name, peakrss() / 1073741824.0); free(w->regs[i<<1|0].a); free(w->regs[i<<1|1].a); } }