From dac5395126cad88fbefc36675f31ac8ccafe3dbb Mon Sep 17 00:00:00 2001
From: Heng Li <lh3@live.co.uk>
Date: Fri, 21 Jan 2011 23:56:18 -0500
Subject: [PATCH] fixed a typo in help

---
 bwtsw2_main.c | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/bwtsw2_main.c b/bwtsw2_main.c
index e601381..0f1c660 100644
--- a/bwtsw2_main.c
+++ b/bwtsw2_main.c
@@ -47,7 +47,7 @@ int bwa_bwtsw2(int argc, char *argv[])
 		fprintf(stderr, "         -r INT   gap extension penalty [%d]\n", opt->r);
 //		fprintf(stderr, "         -y FLOAT error recurrence coef. (4..16) [%.1f]\n", opt->yita);
 		fprintf(stderr, "\n");
-		fprintf(stderr, "         -t INT   nmber of threads [%d]\n", opt->n_threads);
+		fprintf(stderr, "         -t INT   number of threads [%d]\n", opt->n_threads);
 		fprintf(stderr, "         -s INT   size of a chunk of reads [%d]\n", opt->chunk_size);
 		fprintf(stderr, "\n");
 		fprintf(stderr, "         -w INT   band width [%d]\n", opt->bw);
@@ -62,7 +62,7 @@ int bwa_bwtsw2(int argc, char *argv[])
         fprintf(stderr, "         -f FILE  file to output results to instead of stdout\n");
 		fprintf(stderr, "\n");
 
-		{
+		if (0) {
 			double c, theta, eps, delta;
 			c = opt->a / log(opt->yita);
 			theta = exp(-opt->b / c) / opt->yita;