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highlight Liu et al. It seems good.

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Heng Li 2014-10-23 14:52:48 -04:00
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README-alt.md
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@ -156,8 +156,8 @@ have ignored these important genes.
We recommend to include the genomic regions of classical HLA genes in the BWA
index. This way we will be able to get a more complete collection of reads
mapped to HLA. We can then isolate these reads with little computational cost
and type HLA genes with another program, such as [Dilthey et al (2014)][hla1] or
one from [this list][hlatools].
and type HLA genes with another program, such as [Liu et al (2013)][hla2],
[Dilthey et al (2014)][hla1] or one from [this list][hlatools].
If the postprocessing script `bwa-postalt.js` is invoked with `-p prefix`, it
will also write the top three alleles to file `prefix.hla`. However, as most HLA
@ -194,3 +194,4 @@ can even get rid of ALT contigs for good.
[hla1]: http://biorxiv.org/content/early/2014/07/08/006973
[hlalink]: http://www.hladiseaseassociations.com
[hlatools]: https://www.biostars.org/p/93245/
[hla2]: http://nar.oxfordjournals.org/content/41/14/e142.full.pdf+html