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Merge pull request #343 from nh13/patch-7 

Update bwa.1 to remove ancient reference to picard
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Heng Li 2022-03-06 18:05:46 -05:00 committed by GitHub
parent d587a9561b e43eace9e5
commit d47f12cddc
1 changed files with 2 additions and 2 deletions
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@ -154,8 +154,8 @@ batch of reads.
The BWA-MEM algorithm performs local alignment. It may produce multiple primary
alignments for different part of a query sequence. This is a crucial feature
for long sequences. However, some tools such as Picard's markDuplicates does
not work with split alignments. One may consider to use option
for long sequences. However, some tools may not work with split alignments.
One may consider to use option
.B -M
to flag shorter split hits as secondary.