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commented out debugging code

This commit is contained in:
Heng Li 2012-04-02 12:05:15 -04:00
parent 790df95e1a
commit cff473393c
1 changed files with 2 additions and 0 deletions
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2
bwtsw2_aux.c
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@ -192,6 +192,7 @@ static void gen_cigar(const bsw2opt_t *opt, int lq, uint8_t *seq[2], const uint8
target[k - p->k] = pac[k>>2] >> (~k&3)*2 & 0x3; target[k - p->k] = pac[k>>2] >> (~k&3)*2 & 0x3;
score = aln_global_core(target, p->len, query, end - beg, &par, path, &path_len); score = aln_global_core(target, p->len, query, end - beg, &par, path, &path_len);
q->cigar = aln_path2cigar32(path, path_len, &q->n_cigar); q->cigar = aln_path2cigar32(path, path_len, &q->n_cigar);
#if 0
if (name && score != p->G) { // debugging only if (name && score != p->G) { // debugging only
int j, glen = 0; int j, glen = 0;
for (j = 0; j < q->n_cigar; ++j) for (j = 0; j < q->n_cigar; ++j)
@ -200,6 +201,7 @@ static void gen_cigar(const bsw2opt_t *opt, int lq, uint8_t *seq[2], const uint8
fprintf(stderr, "[E::%s] %s - unequal score: %d != %d; (qlen, aqlen, arlen, glen, bw) = (%d, %d, %d, %d, %d)\n", fprintf(stderr, "[E::%s] %s - unequal score: %d != %d; (qlen, aqlen, arlen, glen, bw) = (%d, %d, %d, %d, %d)\n",
__func__, name, score, p->G, lq, end - beg, p->len, glen, opt->bw); __func__, name, score, p->G, lq, end - beg, p->len, glen, opt->bw);
} }
#endif
if (beg != 0 || end < lq) { // write soft clipping if (beg != 0 || end < lq) { // write soft clipping
q->cigar = realloc(q->cigar, 4 * (q->n_cigar + 2)); q->cigar = realloc(q->cigar, 4 * (q->n_cigar + 2));
if (beg != 0) { if (beg != 0) {