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Document that the XB tag now contains the mapping quality too

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clintval 2022-05-19 13:43:22 -04:00
parent 8fdc96b5cf
commit c7c2e6ddf7
1 changed files with 1 additions and 1 deletions
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fastmap.c
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@ -319,7 +319,7 @@ int main_mem(int argc, char *argv[])
fprintf(stderr, " specify the mean, standard deviation (10%% of the mean if absent), max\n"); fprintf(stderr, " specify the mean, standard deviation (10%% of the mean if absent), max\n");
fprintf(stderr, " (4 sigma from the mean if absent) and min of the insert size distribution.\n"); fprintf(stderr, " (4 sigma from the mean if absent) and min of the insert size distribution.\n");
fprintf(stderr, " FR orientation only. [inferred]\n"); fprintf(stderr, " FR orientation only. [inferred]\n");
fprintf(stderr, " -u output XB instead of XA; XB is XA with the alignment score added.\n"); fprintf(stderr, " -u output XB instead of XA; XB is XA with the alignment score and mapping quality added.\n");
fprintf(stderr, "\n"); fprintf(stderr, "\n");
fprintf(stderr, "Note: Please read the man page for detailed description of the command line and options.\n"); fprintf(stderr, "Note: Please read the man page for detailed description of the command line and options.\n");
fprintf(stderr, "\n"); fprintf(stderr, "\n");