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r808: a minor bug with the new index -b

This commit is contained in:
Heng Li 2014-08-25 10:36:24 -04:00
parent 1bba5ef20e
commit bf7d1d46ca
2 changed files with 3 additions and 2 deletions
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3
bwtindex.c
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@ -208,6 +208,7 @@ int bwa_index(int argc, char *argv[]) // the "index" command
if (*str == 'G' || *str == 'g') block_size *= 1024 * 1024 * 1024; if (*str == 'G' || *str == 'g') block_size *= 1024 * 1024 * 1024;
else if (*str == 'M' || *str == 'm') block_size *= 1024 * 1024; else if (*str == 'M' || *str == 'm') block_size *= 1024 * 1024;
else if (*str == 'K' || *str == 'k') block_size *= 1024; else if (*str == 'K' || *str == 'k') block_size *= 1024;
break;
default: return 1; default: return 1;
} }
} }
@ -217,7 +218,7 @@ int bwa_index(int argc, char *argv[]) // the "index" command
fprintf(stderr, "Usage: bwa index [options] <in.fasta>\n\n"); fprintf(stderr, "Usage: bwa index [options] <in.fasta>\n\n");
fprintf(stderr, "Options: -a STR BWT construction algorithm: bwtsw or is [auto]\n"); fprintf(stderr, "Options: -a STR BWT construction algorithm: bwtsw or is [auto]\n");
fprintf(stderr, " -p STR prefix of the index [same as fasta name]\n"); fprintf(stderr, " -p STR prefix of the index [same as fasta name]\n");
fprintf(stderr, " -b INT block size for the bwtsw algorithm (force -a bwtsw) [%d]\n", block_size); fprintf(stderr, " -b INT block size for the bwtsw algorithm (effective with -a bwtsw) [%d]\n", block_size);
fprintf(stderr, " -6 index files named as <in.fasta>.64.* instead of <in.fasta>.* \n"); fprintf(stderr, " -6 index files named as <in.fasta>.64.* instead of <in.fasta>.* \n");
fprintf(stderr, "\n"); fprintf(stderr, "\n");
fprintf(stderr, "Warning: `-a bwtsw' does not work for short genomes, while `-a is' and\n"); fprintf(stderr, "Warning: `-a bwtsw' does not work for short genomes, while `-a is' and\n");

2
main.c
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@ -4,7 +4,7 @@
#include "utils.h" #include "utils.h"
#ifndef PACKAGE_VERSION #ifndef PACKAGE_VERSION
#define PACKAGE_VERSION "0.7.10-r807-dirty" #define PACKAGE_VERSION "0.7.10-r808-dirty"
#endif #endif
int bwa_fa2pac(int argc, char *argv[]); int bwa_fa2pac(int argc, char *argv[]);