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Use $CPPFLAGS and $LDFLAGS if they are set 

The bwa makefile doesn't set these two itself, but the environment
or make command line might set any of CC/CPPFLAGS/CFLAGS/LDFLAGS/LIBS.
Use $(CPPFLAGS) when compiling and $(LDFLAGS) when linking so they can
be used to customise the build. Remove $(DFLAGS) from link commands as
these preprocessor options are irrelevant for linking.
This commit is contained in:
John Marshall 2019-12-15 18:14:49 +00:00 committed by John Marshall
parent 59cac0131a
commit be36d981cd
1 changed files with 4 additions and 4 deletions
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8
Makefile
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@ -22,15 +22,15 @@ endif
.SUFFIXES:.c .o .cc .SUFFIXES:.c .o .cc
.c.o: .c.o:
$(CC) -c $(CFLAGS) $(DFLAGS) $(INCLUDES) $< -o $@ $(CC) -c $(CFLAGS) $(DFLAGS) $(INCLUDES) $(CPPFLAGS) $< -o $@
all:$(PROG) all:$(PROG)
bwa:libbwa.a $(AOBJS) main.o bwa:libbwa.a $(AOBJS) main.o
$(CC) $(CFLAGS) $(DFLAGS) $(AOBJS) main.o -o $@ -L. -lbwa $(LIBS) $(CC) $(CFLAGS) $(LDFLAGS) $(AOBJS) main.o -o $@ -L. -lbwa $(LIBS)
bwamem-lite:libbwa.a example.o bwamem-lite:libbwa.a example.o
$(CC) $(CFLAGS) $(DFLAGS) example.o -o $@ -L. -lbwa $(LIBS) $(CC) $(CFLAGS) $(LDFLAGS) example.o -o $@ -L. -lbwa $(LIBS)
libbwa.a:$(LOBJS) libbwa.a:$(LOBJS)
$(AR) -csru $@ $(LOBJS) $(AR) -csru $@ $(LOBJS)
@ -39,7 +39,7 @@ clean:
rm -f gmon.out *.o a.out $(PROG) *~ *.a rm -f gmon.out *.o a.out $(PROG) *~ *.a
depend: depend:
( LC_ALL=C ; export LC_ALL; makedepend -Y -- $(CFLAGS) $(DFLAGS) -- *.c ) ( LC_ALL=C ; export LC_ALL; makedepend -Y -- $(CFLAGS) $(DFLAGS) $(CPPFLAGS) -- *.c )
# DO NOT DELETE THIS LINE -- make depend depends on it. # DO NOT DELETE THIS LINE -- make depend depends on it.