error in altpost
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@ -692,6 +692,7 @@ function bwa_altgen(args)
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// This is in effect a simplified version of bwa_genalt().
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// This is in effect a simplified version of bwa_genalt().
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function bwa_altlift(args)
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function bwa_altlift(args)
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{
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{
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var opt = { a:1, b:4, o:6, e:1 };
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if (args.length == 0) {
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if (args.length == 0) {
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print("Usage: k8 bwa-helper.js altlift <alt-to-ref.sam> [aln.sam]");
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print("Usage: k8 bwa-helper.js altlift <alt-to-ref.sam> [aln.sam]");
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exit(1);
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exit(1);
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