diff --git a/NEWS b/NEWS index be7c035..0a969e1 100644 --- a/NEWS +++ b/NEWS @@ -16,20 +16,20 @@ In addition to the algorithmic improvements, BWA-SW also implements a few handy features, some of which are experimental: 1. BWA-MEM automatically infers pair orientation from a batch of single-end - alignments. It allows more than one orientations if there are sufficient - reads supporting them. This feature has not been tested on reads from - Illumina jumping library yet. + alignments. It allows more than one orientations if there are sufficient + reads supporting them. This feature has not been tested on reads from + Illumina jumping library yet. 2. BWA-MEM optionally takes one interleaved fastq for paired-end mapping. It - is possible to convert a name-sorted BAM to an interleaved fastq on the fly - and feed the data stream to BWA-MEM for mapping. + is possible to convert a name-sorted BAM to an interleaved fastq on the fly + and feed the data stream to BWA-MEM for mapping. 3. BWA-MEM optionally copies FASTA/Q comments to the final SAM output. This helps to transfer individual read annotations to the output. 4. BWA-MEM supports more advanced piping. Users can now run: - (bwa mem ref.fa '