r301: left-align indels
Don't know why the change is working...
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8
ksw.c
8
ksw.c
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@ -492,10 +492,10 @@ int ksw_global(int qlen, const uint8_t *query, int tlen, const uint8_t *target,
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uint8_t d; // direction
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p->h = h1;
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h += q[j];
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d = h > e? 0 : 1;
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h = h > e? h : e;
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d = h > f? d : 2;
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h = h > f? h : f;
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d = h >= e? 0 : 1;
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h = h >= e? h : e;
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d = h >= f? d : 2;
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h = h >= f? h : f;
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h1 = h;
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h -= gapoe;
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e -= gape;
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