diff --git a/bwamem.c b/bwamem.c index d0efe07..1b94fb9 100644 --- a/bwamem.c +++ b/bwamem.c @@ -246,8 +246,7 @@ mem_chain_v mem_chain(const mem_opt_t *opt, const bwt_t *bwt, const bntseq_t *bn int rid, to_add = 0; s.rbeg = tmp.pos = bwt_sa(bwt, p->x[0] + k); // this is the base coordinate in the forward-reverse reference s.qbeg = p->info>>32; - s.len = slen; - s.score = 0; + s.score= s.len = slen; rid = bns_intv2rid(bns, s.rbeg, s.rbeg + s.len); if (rid < 0) continue; // bridging multiple reference sequences or the forward-reverse boundary if (kb_size(tree)) { diff --git a/main.c b/main.c index 02b3409..fdbf555 100644 --- a/main.c +++ b/main.c @@ -4,7 +4,7 @@ #include "utils.h" #ifndef PACKAGE_VERSION -#define PACKAGE_VERSION "0.7.8-r731-dirty" +#define PACKAGE_VERSION "0.7.8-r733-dirty" #endif int bwa_fa2pac(int argc, char *argv[]);