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Heng Li 2014-09-18 11:54:23 -04:00
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NEWS.md
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@ -2,7 +2,7 @@ Release 0.7.11 (XX September, 2014)
-----------------------------------
A major change to BWA-MEM is the support of mapping to ALT contigs. To use this
feature, users need to manually create a file "<indexbase>.alt" with each line
feature, users need to manually create a file `indexbase.alt` with each line
giving the name of an ALT contig. During alignment, BWA-MEM will be able to
classify potential hits to ALT and non-ALT hits. It reports alignments and
assigns mapping quality (mapQ) loosely following these rules: