diff --git a/bwamem.c b/bwamem.c index 766227d..40b481a 100644 --- a/bwamem.c +++ b/bwamem.c @@ -612,7 +612,7 @@ void bwa_hit2sam(kstring_t *str, const int8_t mat[25], int q, int r, int w, cons #define is_mapped(x) ((x)->rb >= 0 && (x)->rb < (x)->re && (x)->re <= bns->l_pac<<1) int score, n_cigar, is_rev = 0, rid, mid, copy_mate = 0, NM = -1; uint32_t *cigar = 0; - int64_t pos; + int64_t pos = -1; bwahit_t ptmp, *p = &ptmp; if (!p_) { // in this case, generate an unmapped alignment