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claim bwa-mem long-read mode deprecated

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Heng Li 2017-11-06 19:40:42 -05:00
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[![Build Status](https://travis-ci.org/lh3/bwa.svg?branch=dev)](https://travis-ci.org/lh3/bwa)
[![SourceForge Downloads](https://img.shields.io/sourceforge/dt/bio-bwa.svg)](https://sourceforge.net/projects/bio-bwa/files/?source=navbar)
[![GitHub Downloads](https://img.shields.io/github/downloads/lh3/minimap2/total.svg?style=flat)](https://github.com/lh3/bwa/releases)
**Note: [minimap2][minimap2] has replaced BWA-MEM for PacBio and Nanopore read
alignment.** It is ~50 times as fast, more accurate, produces better base-level
alignment and works with long RNA-seq reads and long-read assemblies.
[minimap2]: https://github.com/lh3/minimap2
## Getting started
git clone https://github.com/lh3/bwa.git