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wrong function to print @HD line in bwa_print_sam_hdr

This commit is contained in:
Joachim Bargsten 2014-08-29 11:51:07 +02:00
parent d9f654908f
commit 9c5fd803e9
1 changed files with 1 additions and 1 deletions
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2
bwa.c
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@ -271,7 +271,7 @@ void bwa_print_sam_hdr(const bntseq_t *bns, const char *rg_line)
{ {
int i; int i;
extern char *bwa_pg; extern char *bwa_pg;
ksprintf(str, "@HD\tVN:1.4\tSO:unknown\n"); err_printf("@HD\tVN:1.4\tSO:unknown\n");
for (i = 0; i < bns->n_seqs; ++i) for (i = 0; i < bns->n_seqs; ++i)
err_printf("@SQ\tSN:%s\tLN:%d\n", bns->anns[i].name, bns->anns[i].len); err_printf("@SQ\tSN:%s\tLN:%d\n", bns->anns[i].name, bns->anns[i].len);
if (rg_line) err_printf("%s\n", rg_line); if (rg_line) err_printf("%s\n", rg_line);