From 9be943cec00eba0e3753ddb904bca962e09dce0f Mon Sep 17 00:00:00 2001 From: Melissa Gymrek Date: Sun, 17 Jan 2016 10:58:02 -0500 Subject: [PATCH] Editing URL for b38 download The previous link appears to no longer exist. --- bwakit/run-gen-ref | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/bwakit/run-gen-ref b/bwakit/run-gen-ref index e129b62..3ed63b2 100755 --- a/bwakit/run-gen-ref +++ b/bwakit/run-gen-ref @@ -2,7 +2,7 @@ root=`dirname $0` -url38="ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_mammals/Homo_sapiens/GRCh38/seqs_for_alignment_pipelines/GCA_000001405.15_GRCh38_full_analysis_set.fna.gz" +url38="ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA_000001405.15_GRCh38/seqs_for_alignment_pipelines.ucsc_ids/GCA_000001405.15_GRCh38_full_analysis_set.fna.gz" url37d5="ftp://ftp.ncbi.nlm.nih.gov/1000genomes/ftp/technical/reference/phase2_reference_assembly_sequence/hs37d5.fa.gz" if [ $# -eq 0 ]; then