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Editing URL for b38 download 

The previous link appears to no longer exist.
This commit is contained in:
Melissa Gymrek 2016-01-17 10:58:02 -05:00
parent 0911122749
commit 9be943cec0
1 changed files with 1 additions and 1 deletions
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bwakit/run-gen-ref
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@ -2,7 +2,7 @@
root=`dirname $0`
url38="ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_mammals/Homo_sapiens/GRCh38/seqs_for_alignment_pipelines/GCA_000001405.15_GRCh38_full_analysis_set.fna.gz"
url38="ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA_000001405.15_GRCh38/seqs_for_alignment_pipelines.ucsc_ids/GCA_000001405.15_GRCh38_full_analysis_set.fna.gz"
url37d5="ftp://ftp.ncbi.nlm.nih.gov/1000genomes/ftp/technical/reference/phase2_reference_assembly_sequence/hs37d5.fa.gz"
if [ $# -eq 0 ]; then