r394: added future plan
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bwamem.c
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bwamem.c
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@ -777,6 +777,7 @@ int mem_approx_mapq_se(const mem_opt_t *opt, const mem_alnreg_t *a)
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return mapq;
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return mapq;
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}
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}
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// TODO (future plan): group hits into a uint64_t[] array. This will be cleaner and more flexible
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void mem_reg2sam_se(const mem_opt_t *opt, const bntseq_t *bns, const uint8_t *pac, bseq1_t *s, mem_alnreg_v *a, int extra_flag, const mem_aln_t *m)
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void mem_reg2sam_se(const mem_opt_t *opt, const bntseq_t *bns, const uint8_t *pac, bseq1_t *s, mem_alnreg_v *a, int extra_flag, const mem_aln_t *m)
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{
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{
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kstring_t str;
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kstring_t str;
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