From 84024101fadbded27fdba02c24bc6c606eac4af3 Mon Sep 17 00:00:00 2001 From: Heng Li Date: Wed, 19 Nov 2014 12:31:32 -0500 Subject: [PATCH 1/2] minor fix to a link --- bwakit/README.md | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/bwakit/README.md b/bwakit/README.md index 4430ffb..1e72a47 100644 --- a/bwakit/README.md +++ b/bwakit/README.md @@ -43,7 +43,7 @@ scripts in the package are available in the [bwa/bwakit][kit] directory. Packaging is done manually for now. -[res]: https://sourceforge.net/projects/bio-bwa/files/ +[res]: https://sourceforge.net/projects/bio-bwa/files/bwakit [sb]: https://github.com/GregoryFaust/samblaster [ta]: https://github.com/lh3/seqtk/blob/master/trimadap.c [smtl]: http://www.htslib.org From d36083bdc5bd8cbe39d6dde8a9f159caf73079e5 Mon Sep 17 00:00:00 2001 From: Heng Li Date: Wed, 19 Nov 2014 12:33:06 -0500 Subject: [PATCH 2/2] minor changes --- bwakit/README.md | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/bwakit/README.md b/bwakit/README.md index 1e72a47..5dcc32f 100644 --- a/bwakit/README.md +++ b/bwakit/README.md @@ -1,6 +1,6 @@ Bwakit is a self-consistent installation-free package of scripts and precompiled -binaries which provide an end-to-end solution to read mapping. In addition to -the basic mapping functionality implemented in bwa, bwakit is able to generate +binaries, providing an end-to-end solution to read mapping. In addition to the +basic mapping functionality implemented in bwa, bwakit is able to generate proper human reference genome and to take advantage of ALT contigs, if present, to improve read mapping and to perform HLA typing for high-coverage human data. It can remap name- or coordinate-sorted BAM with read group and barcode