From 8211fbcb625bef6480d04fa196e7514cbb31eb84 Mon Sep 17 00:00:00 2001
From: Heng Li <lh3@me.com>
Date: Sun, 28 Dec 2014 15:44:59 -0500
Subject: [PATCH] Released 0.7.12

---
 NEWS.md | 10 ++++++++++
 bwa.1   |  2 +-
 main.c  |  2 +-
 3 files changed, 12 insertions(+), 2 deletions(-)

diff --git a/NEWS.md b/NEWS.md
index fd42fa3..4692889 100644
--- a/NEWS.md
+++ b/NEWS.md
@@ -1,3 +1,13 @@
+Release 0.7.12 (28 December 2014)
+---------------------------------
+
+This release fixed a bug in the pair-end mode when ALT contigs are present. It
+leads to undercalling in regions overlapping ALT contigs.
+
+(0.7.12: 28 December 2014, r1039)
+
+
+
 Release 0.7.11 (23 December, 2014)
 ----------------------------------
 
diff --git a/bwa.1 b/bwa.1
index 9b681b7..e30f382 100644
--- a/bwa.1
+++ b/bwa.1
@@ -1,4 +1,4 @@
-.TH bwa 1 "23 December 2014" "bwa-0.7.11-r1034" "Bioinformatics tools"
+.TH bwa 1 "23 December 2014" "bwa-0.7.12-r1034" "Bioinformatics tools"
 .SH NAME
 .PP
 bwa - Burrows-Wheeler Alignment Tool
diff --git a/main.c b/main.c
index c29dc6b..9f776d4 100644
--- a/main.c
+++ b/main.c
@@ -4,7 +4,7 @@
 #include "utils.h"
 
 #ifndef PACKAGE_VERSION
-#define PACKAGE_VERSION "0.7.11-r1038-dirty"
+#define PACKAGE_VERSION "0.7.12-r1039"
 #endif
 
 int bwa_fa2pac(int argc, char *argv[]);