From 77b5b586ad9914639b1da4d2289e30711237662a Mon Sep 17 00:00:00 2001
From: Heng Li <lh3@me.com>
Date: Mon, 25 Feb 2013 17:29:35 -0500
Subject: [PATCH] r282: set min split_len to read length

---
 bwamem.c | 1 +
 main.c   | 2 +-
 2 files changed, 2 insertions(+), 1 deletion(-)

diff --git a/bwamem.c b/bwamem.c
index 5c274b1..2c24ba5 100644
--- a/bwamem.c
+++ b/bwamem.c
@@ -199,6 +199,7 @@ static void mem_insert_seed(const mem_opt_t *opt, kbtree_t(chn) *tree, smem_i *i
 {
 	const bwtintv_v *a;
 	int split_len = (int)(opt->min_seed_len * opt->split_factor + .499);
+	split_len = split_len < itr->len? split_len : itr->len;
 	while ((a = smem_next(itr, split_len, opt->split_width)) != 0) { // to find all SMEM and some internal MEM
 		int i;
 		for (i = 0; i < a->n; ++i) { // go through each SMEM/MEM up to itr->start
diff --git a/main.c b/main.c
index 749c7de..4e2f15d 100644
--- a/main.c
+++ b/main.c
@@ -4,7 +4,7 @@
 #include "utils.h"
 
 #ifndef PACKAGE_VERSION
-#define PACKAGE_VERSION "0.6.2-r281-beta"
+#define PACKAGE_VERSION "0.6.2-r282-beta"
 #endif
 
 static int usage()