diff --git a/bwamem.c b/bwamem.c index 5089d75..9ab22e3 100644 --- a/bwamem.c +++ b/bwamem.c @@ -924,14 +924,14 @@ mem_aln_t mem_reg2aln(const mem_opt_t *opt, const bntseq_t *bns, const uint8_t * exit(1); } w2 = infer_bw(qe - qb, re - rb, ar->truesc, opt->a, opt->q, opt->r); - if (bwa_verbose >= 4) fprintf(stderr, "Band width: infer=%d, opt=%d, alnreg=%d\n", w2, opt->w, ar->w); + if (bwa_verbose >= 4) printf("Band width: infer=%d, opt=%d, alnreg=%d\n", w2, opt->w, ar->w); if (w2 > opt->w) w2 = w2 < ar->w? w2 : ar->w; else w2 = opt->w; i = 0; a.cigar = 0; do { free(a.cigar); a.cigar = bwa_gen_cigar(opt->mat, opt->q, opt->r, w2, bns->l_pac, pac, qe - qb, (uint8_t*)&query[qb], rb, re, &score, &a.n_cigar, &NM); - if (bwa_verbose >= 4) fprintf(stderr, "Final alignment: w2=%d, global_sc=%d, local_sc=%d\n", w2, score, ar->truesc); + if (bwa_verbose >= 4) printf("Final alignment: w2=%d, global_sc=%d, local_sc=%d\n", w2, score, ar->truesc); w2 <<= 1; } while (++i < 3 && score < ar->truesc - opt->a); a.NM = NM;