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fast-bwa
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minor change

This commit is contained in:
Heng Li 2011-10-25 21:39:38 -04:00
parent e890b8ac2e
commit 7467671c30
1 changed files with 2 additions and 1 deletions
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3
fastmap.c
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@ -107,7 +107,7 @@ static int fake_cigar(const bntseq_t *bns, fmhit_v *hits, int beg, int end, int
int main_fastmap(int argc, char *argv[])
{
int c, i, min_iwidth = 3, min_len = 17, max_dist = 100, mem_only = 0;
int c, i, min_iwidth = 20, min_len = 17, max_dist = 50, mem_only = 0;
kseq_t *seq;
bwtint_t k;
gzFile fp;
@ -176,6 +176,7 @@ int main_fastmap(int argc, char *argv[])
if (!mem_only) {
int64_t pos;
int n_cigar, is_rev, ref_id, mapq;
if (hits.n == 0) continue;
mapq = cluster_hits(&hits, max_dist);
n_cigar = fake_cigar(bns, &hits, 0, hits.n, seq->seq.l, cigar, &pos, &is_rev);
bns_cnt_ambi(bns, pos, 1, &ref_id);