From 6ac8dd584023de02525587936c5d2b5fadd9d96b Mon Sep 17 00:00:00 2001 From: Heng Li Date: Tue, 6 May 2014 16:15:14 -0400 Subject: [PATCH] r754: added command msg for -h --- fastmap.c | 1 + main.c | 2 +- 2 files changed, 2 insertions(+), 1 deletion(-) diff --git a/fastmap.c b/fastmap.c index cc5c1af..19800de 100644 --- a/fastmap.c +++ b/fastmap.c @@ -156,6 +156,7 @@ int main_mem(int argc, char *argv[]) fprintf(stderr, "\n"); fprintf(stderr, " -v INT verbose level: 1=error, 2=warning, 3=message, 4+=debugging [%d]\n", bwa_verbose); fprintf(stderr, " -T INT minimum score to output [%d]\n", opt->T); + fprintf(stderr, " -h INT if #hits < INT, output all in the XA tag [%d]\n", opt->max_hits); fprintf(stderr, " -a output all alignments for SE or unpaired PE\n"); fprintf(stderr, " -C append FASTA/FASTQ comment to SAM output\n"); fprintf(stderr, " -M mark shorter split hits as secondary\n\n"); diff --git a/main.c b/main.c index 7a05e80..5273c65 100644 --- a/main.c +++ b/main.c @@ -4,7 +4,7 @@ #include "utils.h" #ifndef PACKAGE_VERSION -#define PACKAGE_VERSION "0.7.8-r749-dirty" +#define PACKAGE_VERSION "0.7.8-r754-dirty" #endif int bwa_fa2pac(int argc, char *argv[]);