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changed the default scoring

This commit is contained in:
Heng Li 2013-02-04 14:51:51 -05:00
parent ba18db1a9f
commit 666638a953
1 changed files with 1 additions and 1 deletions
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bwamem.c
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@ -22,7 +22,7 @@ mem_opt_t *mem_opt_init()
{ {
mem_opt_t *o; mem_opt_t *o;
o = calloc(1, sizeof(mem_opt_t)); o = calloc(1, sizeof(mem_opt_t));
o->a = 1; o->b = 9; o->q = 16; o->r = 1; o->w = 100; o->a = 1; o->b = 5; o->q = 8; o->r = 1; o->w = 100;
o->min_seed_len = 17; o->min_seed_len = 17;
o->max_occ = 10; o->max_occ = 10;
o->max_chain_gap = 10000; o->max_chain_gap = 10000;