From 666638a953a8033913f8e8b8a5da7e24c5ec4c45 Mon Sep 17 00:00:00 2001
From: Heng Li <lh3@me.com>
Date: Mon, 4 Feb 2013 14:51:51 -0500
Subject: [PATCH] changed the default scoring

---
 bwamem.c | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/bwamem.c b/bwamem.c
index b9e7f68..54ee3f1 100644
--- a/bwamem.c
+++ b/bwamem.c
@@ -22,7 +22,7 @@ mem_opt_t *mem_opt_init()
 {
 	mem_opt_t *o;
 	o = calloc(1, sizeof(mem_opt_t));
-	o->a = 1; o->b = 9; o->q = 16; o->r = 1; o->w = 100;
+	o->a = 1; o->b = 5; o->q = 8; o->r = 1; o->w = 100;
 	o->min_seed_len = 17;
 	o->max_occ = 10;
 	o->max_chain_gap = 10000;