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updates grch38 URL 

simple URL update for grch38
fixes #111, #115
grch37 link is still valid
This commit is contained in:
Brad Langhorst 2017-04-27 08:40:48 -04:00 committed by GitHub
parent 5961611c35
commit 6442d009cd
1 changed files with 1 additions and 1 deletions
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bwakit/run-gen-ref
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@ -2,7 +2,7 @@
root=`dirname $0` root=`dirname $0`
url38="ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA_000001405.15_GRCh38/seqs_for_alignment_pipelines.ucsc_ids/GCA_000001405.15_GRCh38_full_analysis_set.fna.gz" url38="ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/001/405/GCA_000001405.15_GRCh38/seqs_for_alignment_pipelines.ucsc_ids/GCA_000001405.15_GRCh38_full_analysis_set.fna.gz"
url37d5="ftp://ftp.ncbi.nlm.nih.gov/1000genomes/ftp/technical/reference/phase2_reference_assembly_sequence/hs37d5.fa.gz" url37d5="ftp://ftp.ncbi.nlm.nih.gov/1000genomes/ftp/technical/reference/phase2_reference_assembly_sequence/hs37d5.fa.gz"
if [ $# -eq 0 ]; then if [ $# -eq 0 ]; then