From 6442d009cd2ec8c20f13b3657be1dd47ff1a4e03 Mon Sep 17 00:00:00 2001 From: Brad Langhorst Date: Thu, 27 Apr 2017 08:40:48 -0400 Subject: [PATCH] updates grch38 URL simple URL update for grch38 fixes #111, #115 grch37 link is still valid --- bwakit/run-gen-ref | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/bwakit/run-gen-ref b/bwakit/run-gen-ref index 3ed63b2..58fab68 100755 --- a/bwakit/run-gen-ref +++ b/bwakit/run-gen-ref @@ -2,7 +2,7 @@ root=`dirname $0` -url38="ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA_000001405.15_GRCh38/seqs_for_alignment_pipelines.ucsc_ids/GCA_000001405.15_GRCh38_full_analysis_set.fna.gz" +url38="ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/001/405/GCA_000001405.15_GRCh38/seqs_for_alignment_pipelines.ucsc_ids/GCA_000001405.15_GRCh38_full_analysis_set.fna.gz" url37d5="ftp://ftp.ncbi.nlm.nih.gov/1000genomes/ftp/technical/reference/phase2_reference_assembly_sequence/hs37d5.fa.gz" if [ $# -eq 0 ]; then