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r293: bugfix - wrong RG type in SAM output

This commit is contained in:
Heng Li 2013-02-26 13:03:35 -05:00
parent c6b226d719
commit 619ac4f93d
2 changed files with 2 additions and 2 deletions
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2
bwamem.c
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@ -584,7 +584,7 @@ void bwa_hit2sam(kstring_t *str, const int8_t mat[25], int q, int r, int w, cons
} }
if (p->score >= 0) { kputsn("\tAS:i:", 6, str); kputw(p->score, str); } if (p->score >= 0) { kputsn("\tAS:i:", 6, str); kputw(p->score, str); }
if (p->sub >= 0) { kputsn("\tXS:i:", 6, str); kputw(p->sub, str); } if (p->sub >= 0) { kputsn("\tXS:i:", 6, str); kputw(p->sub, str); }
if (bwa_rg_id[0]) { kputsn("\tRG:i:", 6, str); kputs(bwa_rg_id, str); } if (bwa_rg_id[0]) { kputsn("\tRG:Z:", 6, str); kputs(bwa_rg_id, str); }
if (s->comment) { kputc('\t', str); kputs(s->comment, str); } if (s->comment) { kputc('\t', str); kputs(s->comment, str); }
kputc('\n', str); kputc('\n', str);
free(cigar); free(cigar);

2
main.c
View File

@ -4,7 +4,7 @@
#include "utils.h" #include "utils.h"
#ifndef PACKAGE_VERSION #ifndef PACKAGE_VERSION
#define PACKAGE_VERSION "0.6.2-r292-beta" #define PACKAGE_VERSION "0.6.2-r293-beta"
#endif #endif
static int usage() static int usage()