diff --git a/bwamem_extra.c b/bwamem_extra.c index 0d64e79..c47b93f 100644 --- a/bwamem_extra.c +++ b/bwamem_extra.c @@ -155,6 +155,8 @@ char **mem_gen_alt(const mem_opt_t *opt, const bntseq_t *bns, const uint8_t *pac if (opt->flag & MEM_F_XB) { kputc(',', &str); kputw(t.score, &str); + kputc(',', &str); + kputw(t.mapq, &str); } kputc(';', &str); free(t.cigar);