zzh
/
fast-bwa
1
0
Fork 0
Code Issues Pull Requests Packages Projects Releases Wiki Activity

deprecate bwasw

This commit is contained in:
Heng Li 2021-03-09 00:52:20 -05:00
parent e2dbfe60e3
commit 5b96937edc
1 changed files with 2 additions and 2 deletions
Show Stats Download Patch File Download Diff File Expand all files Collapse all files

4
main.c
View File

@ -58,7 +58,7 @@ static int usage()
fprintf(stderr, "\n");
fprintf(stderr, "Program: bwa (alignment via Burrows-Wheeler transformation)\n");
fprintf(stderr, "Version: %s\n", PACKAGE_VERSION);
fprintf(stderr, "Contact: Heng Li <lh3@sanger.ac.uk>\n\n");
fprintf(stderr, "Contact: Heng Li <hli@ds.dfci.harvard.edu>\n\n");
fprintf(stderr, "Usage: bwa <command> [options]\n\n");
fprintf(stderr, "Command: index index sequences in the FASTA format\n");
fprintf(stderr, " mem BWA-MEM algorithm\n");
@ -67,7 +67,7 @@ static int usage()
fprintf(stderr, " aln gapped/ungapped alignment\n");
fprintf(stderr, " samse generate alignment (single ended)\n");
fprintf(stderr, " sampe generate alignment (paired ended)\n");
fprintf(stderr, " bwasw BWA-SW for long queries\n");
fprintf(stderr, " bwasw BWA-SW for long queries (DEPRECATED)\n");
fprintf(stderr, "\n");
fprintf(stderr, " shm manage indices in shared memory\n");
fprintf(stderr, " fa2pac convert FASTA to PAC format\n");