write empty .gt file as a placeholder

to suppress error messages from run-bwamem
2014-12-20 22:27:27 -05:00 · 2014-12-20 22:27:27 -05:00 · 5aba188969
parent 32c4e3fe5a
commit 5aba188969
1 changed files with 1 additions and 0 deletions
--- a/bwakit/typeHLA.sh
+++ b/bwakit/typeHLA.sh
@ -15,6 +15,7 @@ fi
 preres="resource-human-HLA"
 root=`dirname $0`
 pre=$1.$2
+touch $pre.gt

 if [ ! -s $pre.fq ]; then
 	echo '** Empty input file. Abort!' >&2