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added -lrt on Linux

This commit is contained in:
Heng Li 2014-10-15 23:23:01 -04:00
parent 6804f17d38
commit 57436ab405
1 changed files with 5 additions and 1 deletions
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6
Makefile
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@ -14,6 +14,10 @@ INCLUDES=
LIBS= -lm -lz -lpthread LIBS= -lm -lz -lpthread
SUBDIRS= . SUBDIRS= .
ifeq ($(shell uname -s),Linux)
LIBS += -lrt
endif
.SUFFIXES:.c .o .cc .SUFFIXES:.c .o .cc
.c.o: .c.o:
@ -52,6 +56,7 @@ bwape.o: ksw.h khash.h
bwase.o: bwase.h bntseq.h bwt.h bwtaln.h utils.h kstring.h malloc_wrap.h bwase.o: bwase.h bntseq.h bwt.h bwtaln.h utils.h kstring.h malloc_wrap.h
bwase.o: bwa.h ksw.h bwase.o: bwa.h ksw.h
bwaseqio.o: bwtaln.h bwt.h utils.h bamlite.h malloc_wrap.h kseq.h bwaseqio.o: bwtaln.h bwt.h utils.h bamlite.h malloc_wrap.h kseq.h
bwashm.o: bwa.h bntseq.h bwt.h
bwt.o: utils.h bwt.h kvec.h malloc_wrap.h bwt.o: utils.h bwt.h kvec.h malloc_wrap.h
bwt_gen.o: QSufSort.h malloc_wrap.h bwt_gen.o: QSufSort.h malloc_wrap.h
bwt_lite.o: bwt_lite.h malloc_wrap.h bwt_lite.o: bwt_lite.h malloc_wrap.h
@ -66,7 +71,6 @@ bwtsw2_core.o: khash.h ksort.h
bwtsw2_main.o: bwt.h bwtsw2.h bntseq.h bwt_lite.h utils.h bwa.h bwtsw2_main.o: bwt.h bwtsw2.h bntseq.h bwt_lite.h utils.h bwa.h
bwtsw2_pair.o: utils.h bwt.h bntseq.h bwtsw2.h bwt_lite.h kstring.h bwtsw2_pair.o: utils.h bwt.h bntseq.h bwtsw2.h bwt_lite.h kstring.h
bwtsw2_pair.o: malloc_wrap.h ksw.h bwtsw2_pair.o: malloc_wrap.h ksw.h
cutvar.o: bwa.h bntseq.h bwt.h kvec.h malloc_wrap.h
example.o: bwamem.h bwt.h bntseq.h bwa.h kseq.h malloc_wrap.h example.o: bwamem.h bwt.h bntseq.h bwa.h kseq.h malloc_wrap.h
fastmap.o: bwa.h bntseq.h bwt.h bwamem.h kvec.h malloc_wrap.h utils.h kseq.h fastmap.o: bwa.h bntseq.h bwt.h bwamem.h kvec.h malloc_wrap.h utils.h kseq.h
is.o: malloc_wrap.h is.o: malloc_wrap.h